1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
|
module langevin
! Initialization and update rule for Langevin particles
use globals
implicit none
double precision :: dt,kT,g,m,eps,sigma,rc ! time step size and physical parameters
double precision :: pref1,pref2 ! auxiliary parameters
double precision, allocatable, dimension(:) :: x,y,vx,vy,ax,ay,vhx,vhy,x0,y0 ! particle positions, accellerations, velocities, half-step velocities, initial positions
contains
subroutine set_parameters
! Set time step and physical parameters
dt=0.0005d0 ! time step size
kT=10d0 ! energy
g=1d0 ! draf coefficient
m=1d0 ! mass of the particles, can be normalized to 1.
eps=1d0
sigma=1d-3
rc=sigma*2d0**(1d0/6d0)
!print *, rc
! Set auxiliary parameters
pref1=g
pref2=sqrt(24d0*kT*g/dt)
end subroutine set_parameters
subroutine initialize_particles
integer :: i
double precision :: ran1,ran2,gr1,gr2
! Give particles initial position and velocity
do i=1,n
call random_number(ran1) ! uses the built-in PRNG, easy but not very accurate
call random_number(ran2)
x(i)=L*(ran1-0.5d0)
x0(i)=x(i)
y(i)=L*(ran2-0.5d0)
y0(i)=y(i)
ax(i)=0d0
ay(i)=0d0
call random_number(ran1)
call random_number(ran2)
gr1=sqrt(kT/(m))*sqrt(-2*log(ran1))*cos(2*pi*ran2) ! Box-Mueller transform
gr2=sqrt(kT/(m))*sqrt(-2*log(ran1))*sin(2*pi*ran2)
vx(i)=gr1
vy(i)=gr2
end do
end subroutine initialize_particles
end module langevin
module BC
! Subroutines related to the boundary conditions
use globals
use langevin
implicit none
contains
subroutine impose_BC(i)
integer :: i
!> Recall we are inside an LxL box centered at the origin
!> Top boundary
if(y(i) .GT. L/2) then
y(i) = L - y(i)
vhy(i) = -vhy(i)
end if
!> Left boundary
if(x(i) .LT. -L/2) then
x(i) = -L - x(i)
vhx(i) = -vhx(i)
end if
!> Bottom boundary
if(y(i) .LT. -L/2) then
y(i) = -L - y(i)
vhy(i) = -vhy(i)
end if
!> Right boundary
if(x(i) .GT. L/2) then
x(i) = L - x(i)
vhx(i) = -vhx(i)
end if
!> Final check
if(abs(x(i)).GT.L/2 .OR. abs(y(i)).GT.L/2) then
!> Particle is still outside, don't track it
is_tracked(i) = .FALSE.
endif
end subroutine impose_BC
end module BC
program main
use globals
use langevin
use BC
implicit none
integer :: i,j
double precision :: t,t_max,m1,m2,dij,rx,ry,F
double precision :: wtime,begin,end
double precision, dimension(n) :: ran1, ran2
! Open files
!open(12,file='means')
open(23,file='particle_A')
open(24,file='particle_B')
open(25,file='interactions')
! Allocate arrays
allocate(x(n),y(n),vx(n),vy(n),ax(n),ay(n),vhx(n),vhy(n),x0(n),y0(n))
t=0d0
t_max=10d0 ! integration time
call set_parameters
call initialize_particles
call cpu_time(begin)
!> 1. Update half-velocity
!> 2. Update position
!> 3. Compute accelerations and forces
!> 4. Update all velocities
do while(t.lt.t_max)
vhx = vx+0.5d0*ax*dt
vhy = vy+0.5d0*ay*dt
x = x + vhx*dt
y = y + vhy*dt
do i = 1,n
call impose_BC(i)
end do
call random_number(ran1)
ran1 = ran1-0.5d0
call random_number(ran2)
ran2 = ran2-0.50
ax = 0d0
ay = 0d0
!ax = ax - pref1*vhx + pref2*ran1
!ay = ay - pref1*vhy + pref2*ran2
ax = ax - pref1*vhx + 0.d0*ran1
ay = ay - pref1*vhy + 0.d0*ran2
do i=1,n
do j=1,n
if(j.ne.i) then
if(.not.is_tracked(j)) cycle
rx=x(j)-x(i)
ry=y(j)-y(i)
dij = sqrt(rx**2 + ry**2)
if(dij.lt.rc) then
F = 4d0*eps*( -12d0*sigma**12/dij**13 + 6d0*sigma**6/dij**7)
ax(i)=ax(i)+F*rx/(dij*m)
ay(i)=ay(i)+F*ry/(dij*m)
endif
end if
end do
end do
vx=vhx+0.5d0*ax*dt
vy=vhy+0.5d0*ay*dt
t = t + dt
do i=1,n
print '(e24.12,e24.12)', x(i), y(i)
end do
print *
print *
end do
call cpu_time(end)
!print *,'Wtime=',end-begin
!print *, count(is_tracked), "particles conserved out of ", size(is_tracked)
! De-allocate arrays
deallocate(x,y,vx,vy,ax,ay,x0,y0)
! Close files
!close(11)
!close(12)
close(23)
close(24)
close(25)
end program main
|