From 5b08f435327695bb633cd21ae8252b25528de3f6 Mon Sep 17 00:00:00 2001
From: Connor Moore <connor@hhmoore.ca>
Date: Mon, 23 Mar 2026 01:40:30 -0400
Subject: New report and code for final submission.

---
 report/Figures/rmds.tex | 130 ++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 130 insertions(+)
 create mode 100644 report/Figures/rmds.tex

(limited to 'report/Figures/rmds.tex')

diff --git a/report/Figures/rmds.tex b/report/Figures/rmds.tex
new file mode 100644
index 0000000..8f2b9bc
--- /dev/null
+++ b/report/Figures/rmds.tex
@@ -0,0 +1,130 @@
+% GNUPLOT: LaTeX picture with Postscript
+\begingroup
+  \makeatletter
+  \providecommand\color[2][]{%
+    \GenericError{(gnuplot) \space\space\space\@spaces}{%
+      Package color not loaded in conjunction with
+      terminal option `colourtext'%
+    }{See the gnuplot documentation for explanation.%
+    }{Either use 'blacktext' in gnuplot or load the package
+      color.sty in LaTeX.}%
+    \renewcommand\color[2][]{}%
+  }%
+  \providecommand\includegraphics[2][]{%
+    \GenericError{(gnuplot) \space\space\space\@spaces}{%
+      Package graphicx or graphics not loaded%
+    }{See the gnuplot documentation for explanation.%
+    }{The gnuplot epslatex terminal needs graphicx.sty or graphics.sty.}%
+    \renewcommand\includegraphics[2][]{}%
+  }%
+  \providecommand\rotatebox[2]{#2}%
+  \@ifundefined{ifGPcolor}{%
+    \newif\ifGPcolor
+    \GPcolortrue
+  }{}%
+  \@ifundefined{ifGPblacktext}{%
+    \newif\ifGPblacktext
+    \GPblacktexttrue
+  }{}%
+  % define a \g@addto@macro without @ in the name:
+  \let\gplgaddtomacro\g@addto@macro
+  % define empty templates for all commands taking text:
+  \gdef\gplbacktext{}%
+  \gdef\gplfronttext{}%
+  \makeatother
+  \ifGPblacktext
+    % no textcolor at all
+    \def\colorrgb#1{}%
+    \def\colorgray#1{}%
+  \else
+    % gray or color?
+    \ifGPcolor
+      \def\colorrgb#1{\color[rgb]{#1}}%
+      \def\colorgray#1{\color[gray]{#1}}%
+      \expandafter\def\csname LTw\endcsname{\color{white}}%
+      \expandafter\def\csname LTb\endcsname{\color{black}}%
+      \expandafter\def\csname LTa\endcsname{\color{black}}%
+      \expandafter\def\csname LT0\endcsname{\color[rgb]{1,0,0}}%
+      \expandafter\def\csname LT1\endcsname{\color[rgb]{0,1,0}}%
+      \expandafter\def\csname LT2\endcsname{\color[rgb]{0,0,1}}%
+      \expandafter\def\csname LT3\endcsname{\color[rgb]{1,0,1}}%
+      \expandafter\def\csname LT4\endcsname{\color[rgb]{0,1,1}}%
+      \expandafter\def\csname LT5\endcsname{\color[rgb]{1,1,0}}%
+      \expandafter\def\csname LT6\endcsname{\color[rgb]{0,0,0}}%
+      \expandafter\def\csname LT7\endcsname{\color[rgb]{1,0.3,0}}%
+      \expandafter\def\csname LT8\endcsname{\color[rgb]{0.5,0.5,0.5}}%
+    \else
+      % gray
+      \def\colorrgb#1{\color{black}}%
+      \def\colorgray#1{\color[gray]{#1}}%
+      \expandafter\def\csname LTw\endcsname{\color{white}}%
+      \expandafter\def\csname LTb\endcsname{\color{black}}%
+      \expandafter\def\csname LTa\endcsname{\color{black}}%
+      \expandafter\def\csname LT0\endcsname{\color{black}}%
+      \expandafter\def\csname LT1\endcsname{\color{black}}%
+      \expandafter\def\csname LT2\endcsname{\color{black}}%
+      \expandafter\def\csname LT3\endcsname{\color{black}}%
+      \expandafter\def\csname LT4\endcsname{\color{black}}%
+      \expandafter\def\csname LT5\endcsname{\color{black}}%
+      \expandafter\def\csname LT6\endcsname{\color{black}}%
+      \expandafter\def\csname LT7\endcsname{\color{black}}%
+      \expandafter\def\csname LT8\endcsname{\color{black}}%
+    \fi
+  \fi
+    \setlength{\unitlength}{0.0500bp}%
+    \ifx\gptboxheight\undefined%
+      \newlength{\gptboxheight}%
+      \newlength{\gptboxwidth}%
+      \newsavebox{\gptboxtext}%
+    \fi%
+    \setlength{\fboxrule}{0.5pt}%
+    \setlength{\fboxsep}{1pt}%
+    \definecolor{tbcol}{rgb}{1,1,1}%
+\begin{picture}(7200.00,4320.00)%
+    \gplgaddtomacro\gplbacktext{%
+      \csname LTb\endcsname%%
+      \put(820,655){\makebox(0,0)[r]{\strut{}$10^{-5}$}}%
+      \csname LTb\endcsname%%
+      \put(820,1146){\makebox(0,0)[r]{\strut{}$10^{-4}$}}%
+      \csname LTb\endcsname%%
+      \put(820,1638){\makebox(0,0)[r]{\strut{}$10^{-3}$}}%
+      \csname LTb\endcsname%%
+      \put(820,2129){\makebox(0,0)[r]{\strut{}$10^{-2}$}}%
+      \csname LTb\endcsname%%
+      \put(820,2620){\makebox(0,0)[r]{\strut{}$10^{-1}$}}%
+      \csname LTb\endcsname%%
+      \put(820,3112){\makebox(0,0)[r]{\strut{}$10^{0}$}}%
+      \csname LTb\endcsname%%
+      \put(820,3603){\makebox(0,0)[r]{\strut{}$10^{1}$}}%
+      \csname LTb\endcsname%%
+      \put(820,4095){\makebox(0,0)[r]{\strut{}$10^{2}$}}%
+      \csname LTb\endcsname%%
+      \put(1425,450){\makebox(0,0){\strut{}$10^{-3}$}}%
+      \csname LTb\endcsname%%
+      \put(2656,450){\makebox(0,0){\strut{}$10^{-2}$}}%
+      \csname LTb\endcsname%%
+      \put(3888,450){\makebox(0,0){\strut{}$10^{-1}$}}%
+      \csname LTb\endcsname%%
+      \put(5119,450){\makebox(0,0){\strut{}$10^{0}$}}%
+      \csname LTb\endcsname%%
+      \put(6351,450){\makebox(0,0){\strut{}$10^{1}$}}%
+    }%
+    \gplgaddtomacro\gplfronttext{%
+      \csname LTb\endcsname%%
+      \put(2164,3910){\makebox(0,0)[r]{\strut{}$\gamma = 0.5$}}%
+      \csname LTb\endcsname%%
+      \put(2164,3706){\makebox(0,0)[r]{\strut{}$\gamma = 1.0$}}%
+      \csname LTb\endcsname%%
+      \put(2164,3501){\makebox(0,0)[r]{\strut{}$\gamma = 100.0$}}%
+      \csname LTb\endcsname%%
+      \put(2164,3296){\makebox(0,0)[r]{\strut{}$\gamma = 1000.0$}}%
+      \csname LTb\endcsname%%
+      \put(186,2375){\rotatebox{-270.00}{\makebox(0,0){\strut{}RMSD [m]}}}%
+      \csname LTb\endcsname%%
+      \put(3888,143){\makebox(0,0){\strut{}Simulation Time [s]}}%
+    }%
+    \gplbacktext
+    \put(0,0){\includegraphics[width={360.00bp},height={216.00bp}]{rmds}}%
+    \gplfronttext
+  \end{picture}%
+\endgroup
-- 
cgit v1.2.3

